詹姆斯一. 福斯特

福斯特’s current research is focused on characterizing evolutionarily permissible ecological structures in microbial ecosystems and on developing bioinformatics for very large sequence datasets. He continues to examine simulations of evolutionary processes to design complex artifacts and optimize functions. He works in close collaboration with biologists, 统计学家, 数学家, and computer scientists.

• Beck D, Settles M, 福斯特是. OTUbase: an R infrastructure package for operational taxonomic unit data. 生物信息学. 2011年6月. 15;27(12):1700–1701.
• 公里狩猎, 是培养, LJ福尼, 梅花Shuette, 戴斯。莱纳姆:贝克, Z Abdo, 路福克斯, 我威廉姆斯, 可McGuire, MA McGuire (2011) Characterization of the 多样性 and Temporal Stability of Bacterial Communities in Human Milk. 《bet365亚洲官网》. 6(6) e21313. doi: 10.1371 /杂志.玉米饼.
• Norris V, Zemirline A, Amar P, Audinot JN, Ballet P, Ben-Jacob E等。. Computing with bacterial constituents, cells and populations: from bioputing to bactoputing. 理论Biosci. 2011年3月. 8;130(3):211–22
• Microbial Communities as Experimental Units. 2011 May;61(5):398–406. 舒特等人, U, 阿卜杜Z, 福斯特是, Forney LJ (2010) Bacterial diversity in a glacier foreland of the High Arctic, 分子生态学. 19(1):41-53. DOI 10.1111j. 1365-294X.2009.04483.x
• 福斯特,JA, 克朗SM, Forney LJ (2009) Application of Ecological Network Theory to the Human Microbiome. Interdisciplinary Perspectives on Infection Diseases. 2009:6pp. doi: 10.1155/2009/839501.
• Keitzer, M & 福斯特，JA (2007). Crossover Bias in Genetic Programming. Proceedings of the 10th European Conference on Genetic Programming, LNCS 4445:33-44.
• 谢尔曼，L, J. Evans, 是培养 (2006). Clearcut: the reference implementation for the relaxed neighbor joining phylogenetic tree construction method. 生物信息学. 15(22):2823-4. PMID: 16982706
• 福尼,我. J.福斯特，J. A., & 莱杰,W. (2006). The vaginal flora of healthy women is not always dominated by Lactobacillus sp. Journal of Infectious Disease. 194, 1468-1469.
• Banzhaf W.贝斯隆，G.克里斯滕森，S.福斯特，J. A.， ksampous, F.左福特，V.等。. (2006年出版). From artificial evolution to computational evolution: a research agenda. Nature Reviews Genetics. 7, 729-735.
• 埃文斯,J.谢尔曼，L., & 福斯特,J. A. (2006). Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method. Journal of Molecular Evolution. 62(6):785-92. PMID: 16752216.
• 害羞的,来说C.，灵魂，T.，弯，S.福斯特，J. A., & 福尼,我. J. (2006). MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms (T-RFLP). Journal of Microbial Ecology. 53(4):562-570. PMID 17406775.
• C. Shyu谢尔曼，L.詹姆斯·A. 福斯特 (2004) Evolutionary computation for multiple sequence alignment, Genetic Programming and Evolvable Machines, 提供参考, 5(2) pp 121-144.
• L. Sheneman和詹姆斯一. 福斯特 (2004) Evolving better multiple sequence alignments. Proc. Genetic and Evolutionary Computing Conference (GECCO), 施普林格出版社，K. Deb等人., eds, Lecture Notes in Computer Science, Volume 3102, pp. 449-460.
• 哈里森,M. 詹姆斯·A. 福斯特 (2004) Co-evolving faults to improve the fault tolerance of sorting networks. Proc. European conference on genetic programming, Springer Verlag, Limerick University, Ireland.  2004年9月.

• Characterizing evolutionary origins and dynamics of microbial ecosystems, especially using metagenomic data, with an emphasis on communities associated with the human microbiome.
• Exploring computational biology and 生物信息学. In particular: simulations for transposable element evolution; phylogenetic inferencing algorithms; multiple sequence alignment algorithms.
• Exploring techniques for and inherent properties of biologically inspired computing. In particular: applications to 生物信息学; applications to survivable hardware and software systems; use in self-repairing and fault tolerant hardware and software systems. Genetic programming, genetic algorithms, evolutionary computation, evolvable hardware.

• UI Teaching Excellence, 1999
• Founding member of IBEST
• Founder, first director of BCB program
• Founder, IBEST Computational 资源 Core